Cryodrgn 作者
WebMay 31, 2024 · CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks （使用神经网络从异质性的单颗粒数据集中重建三维密度图。 作者： … WebThe state-of-the-art method cryoDRGN uses a Variational Autoencoder (VAE) framework to learn a continuous distribution of protein structures from single particle cryo-EM imaging data. While cryoDRGN can model complex structural motions, the Gaussian prior distribution of the VAE fails to match the aggregate approximate posterior, which …
Cryodrgn 作者
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WebCryoDRGN contains interactive tools to visualize a dataset's distribution of per-particle variability, generate density maps for exploratory analysis, extract particle subsets for … WebEllen D. Zhong, Adam Lerer, Joseph H. Davis, Bonnie Berger; Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV), 2024, pp. 4066-4075. Abstract. …
WebMar 25, 2024 · CryoDRGN is a neural network based algorithm for heterogeneous cryo-EM reconstruction. In particular, the method models a continuous distribution over 3D structures by using a neural network based representation for the volume. Manuscripts: CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks. WebMar 23, 2024 · CryoDRGN: Reconstruction of heterogeneous cryo-EM structures using neural networks. Ellen D. Zhong, Tristan Bepler, Bonnie Berger, Joseph H. Davis. Nature Methods 18(2), 2024, 176-182. DOI 10.1038/s41592-020-01049-4; Reconstructing continuous distributions of 3D protein structure from cryo-EM images. Ellen D. Zhong, …
WebFeb 28, 2024 · Underpinning the cryoDRGN method is a deep generative model parameterized by a new neural representation of 3D volumes and a learning algorithm to optimize this representation from unlabeled 2D cryo-EM images. Extended to real datasets and released as an open-source tool, cryoDRGN has been used to discover new protein … WebRelease for version 1.0.0. NEW: cryodrgn analyze_landscape for automatic classification and energy landscape inference NEW: Faster training and higher resolution model with Gaussian Fourier featurization (Use --pe-type gaussian) NEW: cryodrgn_utils -h for standalone utility scripts NEW: cryodrgn_utils write_star for converting cryoDRGN …
WebJun 30, 2024 · Along with former Berger lab member Tristan Belper, Zhong devised software called cryoDRGN. The tool uses neural nets to combine hundreds of thousands of cryo-EM images, and shows scientists the full range of three-dimensional conformations that protein complexes can take, letting them reconstruct the proteins’ motion as they carry out ...
WebThis walkthrough of cryoDRGN analysis of the assembling ribosome dataset (EMPIAR-10076)from Figure 5 of Zhong et al.covers: preprocessing of inputs, initial cryoDRGN training and analysis, removing junk … boneless chicken breast recipes pinterestWebMar 29, 2024 · CryoDRGN: Reconstruction of heterogeneous structures from cryo-electron micrographs using neural networks. Ellen D. Zhong, Tristan Bepler, Bonnie Berger, … boneless chicken breast recipes on blackstoneWebNov 2, 2024 · 1. cryodrgn on Apple M1 enhancement. #152 opened on Oct 2, 2024 by zhonge. 1. Number maps from 1 instead of 0? #151 opened on Sep 30, 2024 by Guillawme. 5. Support .cs file writing for export to cryoSPARC enhancement. #150 opened on Sep 29, 2024 by zhonge. boneless chicken breast recipes friedWebNov 28, 2024 · 本专栏汇总了作者在学习冷冻电镜cryoEM以及cryoET相关内容时的一些知识积累，欢迎大家相互学习交流~ ... 【论文阅读】cryoDRGN：使用神经网络从异质性单颗粒数据集中重建3D map 题目CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks （使用神经网络从 ... boneless chicken breast recipes for airfryerWebApr 2, 2024 · ️ 🐉 cryoDRGN: Deep Reconstructing Generative Networks for cryo-EM heterogeneous reconstruction CryoDRGN is a neural network based algorithm for heterogeneous cryo-EM reconstruction. In particular, the method models a continuous distribution over 3D structures by using a neural network based representation for the … boneless chicken breast recipes for a crowdWebAug 9, 2024 · CryoDRGN is a machine learning system for heterogeneous cryo-EM reconstruction of proteins and protein complexes from single particle cryo-EM data. Central to this approach is a deep generative model for heterogeneous cryo-EM density maps, which we empirically find effectively models both discrete and continuous forms of … boneless chicken breasts at walmartWebEllen D. Zhong. I am interested in problems at the intersection of AI and biology. My research develops core machine learning techniques for computational and structural biology problems, with a particular focus on protein structure determination with cryo-electron microscopy (cryo-EM). boneless chicken breasts for sale