2024 Qtl cartographer 2.5

Qtl cartographer 2.5

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August undefined, 2024

WebQTL analysis for the different traits was conducted using the Windows QTL Cartographer 2.5 software . A composite interval mapping method was used to detect salt resistance in all traits, and an LOD of 2.0 or more was used. ... Five QTLs related to chlorophyll contents were identified on chromosomes 2, 5, 6, 10, and 11. Three QTLs (qCHL-2, qCHL ... http://statgen.ncsu.edu/qtlcart/WQTLCart.htm

Wang, S., Basten, C.J. and Zeng, Z.B. (2012) Windows QTL Cartographer 2

WebStep 3—Analyzing data using QTL Mapping Methods With WinQTLCart able to view the data, you can then select any of six different analysis methods. The end result for some of these methods is another MCD file, but in most cases the process will create a .QRT result file that WinQTLCart can use to graph QTL information. WebDec 9, 2016 · Although below the threshold (2.5), the LOD score of qWCR1 was 2.18 in 2012. qWCR2 was only identified in 2012; nevertheless, it shared the same interval with the major QTL qWBR2. The remaining QTLs, qWCR3 and qWCR6, were only detected in 2011 and explained 6.4 and 8.2% of the phenotypic variation, respectively. do you often go swimming

QTL mapping for quality traits using a high-density genetic map of ...

WebWindows QTL Cartographer maps quantitative trait loci (QTL) in cross populations from inbred lines. WinQTLCart includes a powerful graphic tool for presenting mapping results … QTL Cartographer is a suite of programs to map quantitative traits using a map of … WebDec 1, 2024 · Windows QTL cartographer 2.5 (Wang et al. 2012) was used to perform QTL analysis. Composite interval mapping (CIM) analysis was performed using Kosambi map function with Ri1 cross type (recombinant inbred line, derived by selfing), and forward and backward regression method was used with F-in and F-out equal to 0.01 selection criteria. ... WebApr 18, 2024 · To maximize the mapping accuracy, a two-step procedures involving WinQTL cartographer 2.5 based on a composite interval mapping (CIM) model and QTLNetwork … emergency same day cash loans

A genome-wide SNP-based genetic map and QTL mapping for agronom…

Quantitative trait locus analysis for pod- and kernel-related traits in …

WebApr 18, 2024 · For QTL analysis with WinQTL cartographer 2.5, a permutation test (parameter 1000) was used to determine the QTL with a LOD threshold of 2.5. CIM was performed using Model 6, a value of 5 for ... WebJun 12, 2024 · Pearson’s correlation coefficients between the traits were calculated using IBM SPSS Statistics 19. QTL analysis was conducted using the composite interval mapping (CIM) approach of the Windows QTL Cartographer 2.5 . The CIM were performed using the default parameters with backward and forward regressions with a probability threshold of … emergency same day loans bad creditWebQuantitative trait locus (QTL) analysis was performed to identify the loci controlling these floral traits, using backcross recombinant inbred lines derived from a cross between … do you often help your parents do chores

"WebJan 1, 1996 · QTL mapping was conducted by QTL Cartographer 2.5 (Basten et al. 1997) with the composite interval mapping method (Zeng 1994). The permutation test was run … " - Qtl cartographer 2.5

Qtl cartographer 2.5

QTL mapping for quality traits using a high-density genetic map of ...

WebQTL Cartographer Record added by Jurg Ott (the original Rockefeller list) Version Window version 2.5 (September 2006) Description A program to map quantitative traits sing a map of molecular markers. Author Christopher J. Basten Bruce S. Weir Zhao-Bang Zeng Shengchu Wang (Dept Statistics, North Carolina State University); URL WebApr 12, 2024 · In TOC1, three QTLs (qOC-1-1, qOC-1-2 and qOC-1-3) distributed on chromosome 3, 5 and 9.The QTL, qOC-1-3, with the largest effect (30.84% of the phenotypic variation) was located on chromosome 9.The parental KB717001 allele at this locus had an additive effect of 0.24% for increased oil content. The second QTL qOC-1-2 was located …

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WebComposite interval mapping and multiple interval mapping: procedures and guidelines for using Windows QTL Cartographer. Tremendous progress has been made in recent years … WebJun 1, 2024 · QTL were detected with Windows QTL Cartographer 2.5 software [30], at a threshold LOD score set to 2.5 using 1000 permutation tests. ... QTL thus identified were designated identified QTL. The identified QTL 18WH-OC-1 represents seeds sown in Wuhan in 2024, OC stands for oil content, and 1 represents the serial number of the QTL in the …

http://statgen.ncsu.edu/qtlcart/WinQTLCart.pdf WebDec 1, 2024 · The contribution rate (R 2) and additive effect of a presumptive QTL were simultaneously calculated using Windows QTL Cartographer 2.5. The QTL nomenclature described by McCouch et al. (1997) was adopted in this study, each designation was named begins with ‘q’ followed by the abbreviation of the trait name, the linkage group, and the ...

WebDec 10, 2024 · To detect the QTL controlling seed set and number of sterile spikelets per spike in BC 1 populations, composite interval mapping with a 5-cM window and a maximum of 10 marker cofactors per model was carried out using the Windows QTL Cartographer version 2.5 (Wang et al., 2012). Tests were performed at 1-cM intervals, and cofactors … WebThe results of several QTL mapping studies have indicated that there are only few major genes, which interact with numerous minor genes and environment to give continuous trait phenotype characteristic of quantitative traits. Thus …

WebSuppose, I got QTL positioned on 9.8 cM, and the left and right flanking marker positions are 2.5 cM and 14.6 cM. In between 2.5 cM and 14.6 cM, many markers are present. In this case, shall...

Webqtl×环境互作分析表明, 仅qph1-1、qflw2、qepp1和qtgw5-1 4个qtl存在显著的加性×环境互作效应。进一步对qtgw5-1定位区间所包含的gw5测序分析表明, 高产株系和低产株系的gw5等位基因分别来自亲本中嘉早17和d50, 这与检测到的qtgw5-1的加性效应来自亲本中嘉早17相符。 ... do you often play football after school 肯定回答WebWindows QTL Cartographer V2.5 WinQTLCart Installation Making sure you have the latest release If you already have a version of WinQTLCart on your PC: Open your version of … do you often go to the park 意味WebJun 1, 2024 · QTL analysis was performed by composite interval mapping (CIM) method using Windows QTL Cartographer 2.5 software (Wang et al. 2007) with a logarithm of … do you often hear her sing russian songs do you often listen to musicWebOct 7, 2024 · The composite interval mapping (CIM) of Windows QTL Cartographer 2.5 software (Wang et al. 2012) was used to identify QTLs of leaflet traits under different environments. The threshold of LOD values were estimated from 1000 permutation tests for declaring a significant QTL. do you often go jumping ropeWebMay 26, 2024 · With the ultra-high-density linkage maps, a total of four QTLs were identified after 1000 permutations with an empirical logarithm of the odds (LOD) threshold of 3.5, 4.0 and 3.5 for HL, HN and HW, respectively (Table 2 and Fig. 2 ). The average of QTL intervals was 6.0 Mb with a range of 5.1–8.9 Mb. do you often play footballWebJan 25, 2016 · The software Windows QTL Cartographer 2.5 was used to conduct the composite interval mapping (CIM) . The LOD value chosen was 3.4 to declare a QTL significant based on a permutation test with 1,000 runs to determine the P = 0.05 genome-wide significance level. To identify more potential QTLs, a QTL with a LOD value more … emergency safety kit for car